منابع مشابه
Mapping PDB chains to UniProtKB entries
MOTIVATION UniProtKB/SwissProt is the main resource for detailed annotations of protein sequences. This database provides a jumping-off point to many other resources through the links it provides. Among others, these include other primary databases, secondary databases, the Gene Ontology and OMIM. While a large number of links are provided to Protein Data Bank (PDB) files, obtaining a regularly...
متن کاملPDBsum: Structural summaries of PDB entries
PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image-based and include protein secondary structure, protein-ligand and protein-DNA interactions, PROCHECK analyses of structural quality, and many others. The 3D structures can be viewed interactively in RasMol, PyMOL, and a JavaScript viewer called 3Dmol.js. Users ...
متن کاملThe PDB-Preview database: a repository of in-silico models of 'on-hold' PDB entries
UNLABELLED The PDB-Preview database is a dynamic web repository of in-silico predicted three-dimensional (3D) models of experimentally determined structures that are deposited into the PDB but are not yet publicly released, and are kept 'on-hold'. The PDB-Preview database is automatically generated on a weekly basis by the bioinfo.pl meta-server, which uses top-of-the-line fold-recognition meth...
متن کاملRe-refinement from deposited X-ray data can deliver improved models for most PDB entries
The deposition of X-ray data along with the customary structural models defining PDB entries makes it possible to apply large-scale re-refinement protocols to these entries, thus giving users the benefit of improvements in X-ray methods that have occurred since the structure was deposited. Automated gradient refinement is an effective method to achieve this goal, but real-space intervention is ...
متن کاملTranslating XML Web Data into Ontologies
Translating XML data into ontologies is the problem of finding an instance of an ontology, given an XML document and a specification of the relationship between the XML schema and the ontology. Previous study [8] has investigated the ad hoc approach used in XML data integration. In this paper, we consider to translate an XML web document to an instance of an OWL-DL ontology in the Semantic Web....
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ژورنال
عنوان ژورنال: Acta Crystallographica Section A Foundations of Crystallography
سال: 1996
ISSN: 0108-7673
DOI: 10.1107/s0108767396076556